PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G22200.1
Common NameERF056, T26C19.14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 261aa    MW: 29792.5 Da    PI: 7.0622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G22200.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-1971119355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f tae+Aa a+++a+ +l+g
  AT2G22200.1  71 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEKAALAYDQAAFQLRG 119
                  9******9.**********965...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-2270128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-3270128IPR001471AP2/ERF domain
SMARTSM003802.8E-3770133IPR001471AP2/ERF domain
PROSITE profilePS5103222.76170127IPR001471AP2/ERF domain
PRINTSPR003676.5E-117182IPR001471AP2/ERF domain
PfamPF008477.0E-1471119IPR001471AP2/ERF domain
CDDcd000182.19E-3271129No hitNo description
PRINTSPR003676.5E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
METASLSFPV PNTSFGVNKS MPLGLNQLTP YQIHQIQNQL NHRRSTISNL SPNRIRMKNL  60
TPSTSKTKNL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF ETAEKAALAY DQAAFQLRGD  120
IAKLNFPNLI HEDMNPLPSS VDTKLQAICK SLRKTEEICS VSDQTKEYSV YSVSDKTELF  180
LPKAELFLPK REHLETNELS NESPRSDETS LLDESQAEYS SSDKTFLDFS DTEFEEIGSF  240
GLRKFPSVEI DWDAISKLAN S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2271127360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A2e-2271127663ATERF1
2gcc_A2e-2271127663ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306816360.0
Genevisible263486_at0.0
Expression AtlasAT2G22200-
AtGenExpressAT2G22200-
ATTED-IIAT2G22200-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G22200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G22200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071680.0AC007168.5 Arabidopsis thaliana chromosome 2 clone T26C19 map mi238, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179810.10.0ethylene-responsive transcription factor ERF056
SwissprotQ9SIE40.0ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLD7LDD81e-144D7LDD8_ARALL; Putative uncharacterized protein
STRINGAT2G22200.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Brown RL,Kazan K,McGrath KC,Maclean DJ,Manners JM
    A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis.
    Plant Physiol., 2003. 132(2): p. 1020-32
    [PMID:12805630]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  6. Okamuro JK,Caster B,Villarroel R,Van Montagu M,Jofuku KD
    The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(13): p. 7076-81
    [PMID:9192694]